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Table 1 Protein identification table

From: NanoUPLC-MSE proteomic data assessment of soybean seeds using the Uniprot database

Uniprot code

Description

Protein MW

ScoreAVG

ProductsAVG

PeptidesAVG

Fmol Covariance

NgramAVG

Repeate Rate

% of TSP

P04776

Glycinin G1 OS Glycine max GN GY1 PE 1 S

56333.71

147104.4

523.25

38.5

0.02

85.28

4

17.68

Q549Z4

Proglycinin A2B1 OS Glycine max PE 2 SV

54961.11

69391.44

427.25

38.25

0.67

55.32

4

11.47

Q4LER5

Beta conglycinin alpha subunit Fragment

70348.96

105347.27

301.75

54.25

0.75

32.68

4

6.78

Q3V5S6

Beta conglycinin alpha subunit OS Glycin

70569.34

104417.56

286.5

53.75

0.72

30.91

4

6.41

P04405

Glycinin G2 OS Glycine max GN Gy2 PE 1 S

54961.11

63666.28

370

36.5

1.97

19.12

4

3.96

Q7XXT2

Prepro beta conglycinin alpha prime subu

72532.23

28368.36

295

66

0.67

18.17

4

3.77

P04347

Glycinin OS Glycine max PE 1 SV 1

58412.39

23431.64

191.5

53

0.22

15.99

4

3.31

P02858

Glycinin G4 OS Glycine max GN GY4 PE 1 S

64043.42

31521.33

290.75

60

0.26

14.25

4

2.95

Q9SB12

Glycinin OS Glycine max PE 3 SV 1

58685.70

29853.17

251

68.75

0.48

13.30

4

2.76

Q9S9D0

Glycinin G4 subunit OS Glycine max PE 3

64135.62

32357.33

309

60.25

0.31

11.44

4

2.37

Q04672

Sucrose binding protein OS Glycine max G

60921.87

11679.68

186.25

33.5

0.02

11.37

4

2.36

Q9ATY1

Kunitz trypsin inhibitor OS Glycine max

24434.59

35543.40

112.5

13.75

0.17

11.34

4

2.35

Q948Y0

Beta conglycinin alpha prime subunit OS

72423.19

17151.17

223.5

65.75

0.75

10.95

4

2.27

Q948X9

Beta conglycinin alpha subunit OS Glycin

72760.60

15765.20

186.25

44.25

0.75

9.25

4

1.92

P05046

Lectin OS Glycine max GN LE1 PE 1 SV 1

30928.02

10795.06

63.75

10.25

0.01

7.95

4

1.65

Q94LX2

Beta conglycinin alpha subunit OS Glycin

70591.40

113386.25

365.5

51.75

1.01

7.57

4

1.57

P00489

GLYCOGEN PHOSPHORYLASE MUSCLE FORM EC

97671.64

3801.66

161.5

37.5

0.00

7.33

4

1.52

P11827

Beta conglycinin alpha chain OS Glycine

74610.54

11508.88

185.25

65

0.86

7.31

4

1.52

C6SWW4

Putative uncharacterized protein OS Glyc

22731.98

17601.57

100.5

12.25

0.07

7.12

4

1.48

P25974

Beta conglycinin beta chain OS Glycine m

50609.06

19512.84

186.25

34

0.71

7.10

4

1.47

Q39898

Kunitz trypsin inhibitor OS Glycine max

24361.54

54750.93

144.25

14.5

1.16

6.72

4

1.39

C6T9L1

Putative uncharacterized protein OS Glyc

50621.07

18189.66

182.5

33.25

0.96

6.30

4

1.31

P93708

Glycinin OS Glycine max GN Gly A3B4 PE 2

58691.62

39274.08

237.25

62.5

1.18

5.91

4

1.23

P13916

Beta conglycinin alpha chain OS Glycine

70578.31

113406.84

362

49.5

0.76

5.75

4

1.19

B3TDK4

Lipoxygenase OS Glycine max PE 3 SV 1

94639.64

4359.21

144.25

35.75

0.03

5.63

4

1.17

Q93VL9

Beta conglycinin beta subunit OS Glycine

50580.97

17965.49

159.75

32

0.72

5.29

4

1.10

Q852U5

Glycinin A1bB2 445 OS Glycine max PE 2 S

54845.14

19226.30

97

16

0.33

4.59

4

0.95

P13917

Basic 7S globulin OS Glycine max GN BG P

47134.49

4532.62

62.5

14

0.03

3.51

4

0.73

P01070

Trypsin inhibitor A OS Glycine max GN KT

24290.46

40525.39

125

14

1.97

3.36

4

0.70

Q70EM0

Dehydrin OS Glycine max GN lea D 11 PE 3

23787.84

11066.56

101.5

19

0.02

3.24

4

0.67

Q0MUU5

Beta conglycinin alpha subunit OS Glycin

70172.28

24742.62

233.5

63.25

2.00

3.14

4

0.65

C0KG62

Mutant glycinin A3B4 OS Glycine max PE 2

60494.82

42247.79

242.5

62.25

2.00

2.46

4

0.51

Q7GC77

Glycinin A3B4 subunit OS Glycine max PE

58643.62

50693.51

331

57.5

2.00

2.39

4

0.49

Q53WV6

Napin type 2S albumin 3 OS Glycine max P

19030.31

21340.11

82.75

13

1.17

2.19

4

0.45

Q43452

Glycinin OS Glycine max GN Gy4 PE 3 SV 1

64389.76

32891.71

289.25

50.5

2.00

2.19

4

0.45

Q852U4

Glycinin A1bB2 784 OS Glycine max PE 2 S

54868.22

18987.27

81.75

13.5

1.30

1.90

4

0.39

P10538

Beta amylase OS Glycine max GN BMY1 PE 1

56485.05

1358.99

57

23.5

0.72

1.87

4

0.39

Q8RVH5

Basic 7S globulin 2 OS Glycine max PE 1

47889.37

2086.68

37.25

11.75

0.38

1.87

4

0.39

Q39853

Soybean beta conglycinin alpha subunit F

24453.59

88244.12

88.5

9.25

1.89

1.77

4

0.37

C6SYA7

Putative uncharacterized protein OS Glyc

19027.27

23176.74

87

15

1.19

1.75

4

0.36

Q39871

Late embryongenesis abundant protein OS

50643.91

919.20

40.5

14

0.17

1.65

2

0.34

C6T7B0

Putative uncharacterized protein Fragmen

48939.81

23743.45

190.25

54.25

1.16

1.61

4

0.33

C0J370

Ribulose bisphosphate carboxylase large

52835.80

2789.04

34.25

9.25

0.75

1.60

4

0.33

C6TKH0

Putative uncharacterized protein OS Glyc

32117.31

1246.92

38.75

10

0.03

1.54

4

0.32

Q9SB11

Glycinin OS Glycine max GN A5A4B3 PE 2 S

64253.61

38444.74

381.5

49

1.98

1.24

4

0.26

Q39858

Soybean glycinin A3 B4 subunit Fragment

27467.17

26110.47

58.5

10.25

2.00

1.20

4

0.25

Q39816

7S storage protein alpha subunit OS Glyc

27538.85

8464.43

117.75

29

1.19

0.97

4

0.20

Q39805

Dehydrin like protein OS Glycine max PE

23717.75

10257.65

91.5

17

1.61

0.96

4

0.20

P19594

2S albumin OS Glycine max PE 1 SV 2

19030.31

20001.72

82

14.75

1.74

0.93

4

0.19

P11828

Glycinin G3 OS Glycine max GN GY3 PE 3 S

54869.09

20193.73

96

16.5

0.83

0.86

4

0.18

C6TDF5

Putative uncharacterized protein OS Glyc

42166.14

2011.92

45

12.5

0.61

0.81

2

0.17

Q39876

Maturation associated protein OS Glycine

23713.76

11376.82

107.75

19.25

1.99

0.80

4

0.17

Q42795

Beta amylase OS Glycine max PE 1 SV 1

56413.93

1363.11

54.75

22.5

1.99

0.73

4

0.15

Q42447

Maturation protein OS Glycine max GN MAT

25658.99

3286.16

26.25

6.25

0.73

0.64

4

0.13

Q9SEK9

Seed maturation protein PM25 OS Glycine

25842.80

1323.54

30.33

7.66

0.37

0.63

3

0.13

Q9SP11

Sucrose binding protein homolog S 64 OS

56176.59

2088.61

62.5

24

0.69

0.62

4

0.13

Q9XET0

Putative uncharacterized protein OS Glyc

15154.43

2553.76

27.75

5.75

0.03

0.57

4

0.12

Q9ATY0

Truncated Kunitz trypsin inhibitor OS Gl

16134.39

18524.95

49.5

7.25

2.00

0.57

4

0.12

C6T1Q7

Putative uncharacterized protein OS Glyc

18394.94

4148.8

41.25

10.75

0.67

0.55

4

0.11

Q9LLQ6

Seed maturation protein PM34 OS Glycine

32052.25

1013.75

24.5

10

0.39

0.55

2

0.11

P01064

Bowman Birk type proteinase inhibitor D

10323.16

4799.89

22.25

4.5

0.68

0.54

4

0.11

P25273

Kunitz type trypsin inhibitor KTI2 OS Gl

23085.45

2073.41

19.75

7.25

0.87

0.51

4

0.11

C6T588

Putative uncharacterized protein OS Glyc

16817.85

2001.68

23

6.25

0.14

0.49

4

0.10

A1KR24

Dehydrin OS Glycine max GN LEA 2 D11 PE

25384.72

3672.93

34.25

8.75

0.44

0.46

4

0.10

P09439

Seed lipoxygenase 2 OS Glycine max GN LO

97430.94

763.76

45

27

1.41

0.40

2

0.08

C6TB67

Putative uncharacterized protein OS Glyc

23271.56

1060.30

16

5.33

0.03

0.40

3

0.08

P27066

Ribulose bisphosphate carboxylase large

53066.07

2905.08

31.75

8.75

2.00

0.37

4

0.08

P01063

Bowman Birk type proteinase inhibitor C

9999.68

5359.28

33.25

4.25

0.10

0.34

4

0.07

B3TDK5

Lipoxygenase OS Glycine max PE 3 SV 1

97068.50

753.71

44

26.5

1.41

0.33

2

0.07

Q39875

Soybean lipoxygenase 1 Fragment OS Glyci

36808.29

1111.12

23

12.333333

1.65

0.31

3

0.06

Q9SBA9

Bowman Birk proteinase inhibitor Fragmen

5100.41

8774.56

15

1

0.03

0.31

4

0.06

Q76B18

Kunitz trypsin inhibitor OS Glycine max

24433.60

24408.10

91

12.5

2.00

0.30

4

0.06

O23957

Dehydrin OS Glycine max GN GmPM12 PE 2 S

17319.94

1858.29

13.5

3

1.41

0.28

2

0.06

C6T9Z5

Putative uncharacterized protein OS Glyc

43109.03

1650.38

28

11.5

1.41

0.27

2

0.06

Q84V19

Sucrose binding protein 2 OS Glycine max

56117.52

2226.42

65.75

23.25

1.93

0.25

4

0.05

O22121

Beta subunit of beta conglycinin Fragmen

47975.72

20300.60

200.5

32.75

2.00

0.25

4

0.05

P08170

Seed lipoxygenase 1 OS Glycine max GN LO

94597.61

3028.73

90.75

35.75

1.18

0.21

4

0.04

Q53B72

Putative chalcone isomerase 4 OS Glycine

23495.71

1460.83

11.5

2.5

0.01

0.20

2

0.04

Q43709

Bowman Birk proteinase isoinhibitor D II

12351.73

5458.41

27

4.5

2.00

0.20

4

0.04

Q9ZNZ4

Napin type 2S albumin 1 OS Glycine max P

18404.98

4001.44

39.75

10.5

2.00

0.18

4

0.04

Q94IA1

Kunitz trypsin inhibitor OS Glycine max

24333.52

34662.18

107

12

2.00

0.18

4

0.04

Q588Z3

Beta amylase OS Glycine max GN Gm BamyDa

56441.98

1367.07

58.5

22.75

2.00

0.16

4

0.03

C7EA91

Mutant glycinin subunit A1aB1b OS Glycin

44092.82

71745.98

326.25

33

0.42

0.15

4

0.03

Q70EL8

Dehydrin OS Glycine max GN lea D 11 PE 4

23733.70

9455.43

82.25

16.5

2.00

0.11

4

0.02

P93165

Em protein OS Glycine max PE 4 SV 1

11491.34

3266.78

22.25

6

0.06

0.11

4

0.02

C6TBB3

Putative uncharacterized protein OS Glyc

12345.51

1829.78

14.75

4.5

0.21

0.10

4

0.02

Q4LER6

Beta conglycinin alpha prime subunit OS

72513.18

26588.66

264.25

63.5

2.00

0.09

4

0.02

Q7M1N5

Glycinin A1aB1b Fragments OS Glycine max

6315.28

13404.83

14.5

3.5

1.09

0.07

4

0.01

P25272

Kunitz type trypsin inhibitor KTI1 OS Gl

22831.11

11727.02

70.75

12.5

0.16

0.06

4

0.01

C7EA92

Mutant glycinin subunit A1aB1b OS Glycin

43990.73

65306.21

275.25

30

0.70

0.05

4

0.01

C6T7Y4

Putative uncharacterized protein OS Glyc

33364.68

1386.46

32.5

13.5

2.00

0.04

4

0.01

Q5K3Q9

Putative dehydrin Fragment OS Glycine ma

20395.17

7625.21

70.5

15.75

2.00

0.00

4

0.00

P01071

Trypsin inhibitor B OS Glycine max PE 1

20268.75

17312.94

48.75

7.5

2.00

0.00

4

0.00

Q9FZP9

Alpha subunit of beta conglycinin Fragme

65199.76

25899.30

239.25

55.5

 

0.00

4

0.00

O22120

Alpha subunit of beta conglycinin Fragme

63221.91

105305.79

299.75

42.5

 

0.00

4

0.00

Q588Z5

Beta amylase OS Glycine max GN Gm BamyKz

56419.97

1193.51

46.25

20.75

 

0.00

4

0.00

Q588Z6

Beta amylase OS Glycine max GN Gm BamyTk

56499.03

945.94

42

20

 

0.00

4

0.00

Q588Z4

Beta amylase OS Glycine max GN Gm BamyTk

56426.96

1290.96

50.5

23.25

 

0.00

4

0.00

Q45UE7

Beta amylase OS Glycine max PE 2 SV 1

56412.98

1420.14

54.25

21.25

 

0.00

4

0.00

Q84UB3

Beta conglycinin alpha subunit Fragment

45018.62

24184.62

193.75

39.75

 

0.00

4

0.00

Q50JD8

Beta conglycinin beta subunit Fragment O

48387.22

22348.6

219

28.25

 

0.00

4

0.00

Q70EL7

Dehydrin OS Glycine max GN lea D 11 PE 3

25275.54

3943.08

30

8

 

0.00

3

0.00

Q70EL9

Dehydrin OS Glycine max GN lea D 11 PE 3

25551.97

3591.29

24

5.6666665

 

0.00

3

0.00

Q7M211

Glycinin A3B4 Plasmid pSPGD41 Fragment O

21495.15

29529.21

86

16.75

 

0.00

4

0.00

Q7M210

Glycinin A3B4 Plasmid pSPGL1 Fragment OS

27293.87

30284.32

105.25

23.75

 

0.00

4

0.00

Q6LBP7

Glycinin B 1b subunit 15 AA Fragment OS

1698.00

8521.25

7.6666665

2.3333333

 

0.00

3

0.00

P93707

Glycinin OS Glycine max GN Gly A3B4 PE 2

58633.58

45602.53

283

58.75

 

0.00

4

0.00

Q9LD16

Kunitz trypsin inhibitor 3 OS Glycine ma

24295.44

27398.43

66.25

9.25

 

0.00

4

0.00

Q39899

Kunitz trypsin inhibitor OS Glycine max

24308.45

17312.92

48.75

7.5

 

0.00

4

0.00

Q7XAW0

Lea protein OS Glycine max GN ZLDE 2 PE

25368.76

3593.48

33.75

8.5

 

0.00

4

0.00

Q39870

Lipoxygenase OS Glycine max GN lox2 PE 2

97551.04

754.83

39

25.5

 

0.00

2

0.00

C6T488

Putative uncharacterized protein OS Glyc

24403.62

35506

113.5

13.5

 

0.00

4

0.00

C6SX26

Putative uncharacterized protein OS Glyc

12914.35

3157.77

23.5

3.5

 

0.00

4

0.00

  1. The ScoreAVG is the average PLGS score for each hit. ProductsAVG is the average fragment ion products for a protein hit. PeptideAVG is the average of the peptide hits per identified protein. FmolCovariance is the covariance at the femtomole detection level for each protein in the replicate analyses. NgramAVG is the average (in nanograms) of each protein load on the column. The repetition rate is the repeatability of each protein in the replicates. % of TSP is the percentage of each protein in the total soluble mixture relative to the total protein load (in nanograms) on the column.