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Table 1 Methylation profile of all loci across the 10 HCC samples analyzed in this study.

From: Systematic cross-validation of 454 sequencing and pyrosequencing for the exact quantification of DNA methylation patterns with single CpG resolution

 

RASSF1A

SOCS1

MINT31

LINE1

GSTP1

P16

MAL

miR596

miR663

miR9-3

miR1-1

miR34a

1

10%

8%

4%

61%

9%

3%

6%

5%

21%

10%

11%

7%

2

75%

50%

53%

20%

22%

2%

2%

7%

19%

10%

10%

5%

3

81%

79%

67%

20%

21%

52%

2%

4%

24%

8%

18%

3%

4

28%

24%

15%

54%

11%

4%

6%

12%

10%

8%

15%

6%

5

75%

62%

64%

30%

10%

46%

2%

19%

27%

4%

10%

4%

6

88%

61%

76%

54%

74%

1%

30%

50%

79%

25%

20%

2%

7

89%

71%

37%

42%

28%

1%

12%

16%

18%

28%

17%

3%

8

66%

80%

74%

54%

53%

2%

61%

81%

75%

36%

22%

4%

9

84%

8%

64%

53%

67%

1%

38%

50%

N/A

58%

24%

3%

10

91%

59%

59%

38%

35%

59%

2%

55%

54%

31%

30%

2%

  1. The percentages are the mean methylation values for a given locus in an individual sample (454 sequencing result).