Table 3 The piggyBac and Tol2 targets located within the repetitive sequences of the HEK 293 genome

piggyBac

B89-4

TTAAAGACCCTGTCTCTTAAAAAAAAAAAA

chr16(30140496)

4

0

4

NF

2

B87-4

TTAAGAATGTTGAATATTGGCCCCCACTCT

chr3(55059477)

1

510

511

NF

1

B75-4

TTAAAGAAACAAGTTAACACCGAAGCCAGA

chr17(60391785)

1

1

2

NF

2

B85-4

TTAAAAAAGGCATTATTTTCGCAGCTATCT

chr6(125167100)

0

2

2

NF

1

B42-3

TTAATTTACTTAAGATAATGGCCTCCACAC

chr22(15414966)

5

3

8

NF

1

B100-1

TTAAGAAAGGAGTTGAATTAAGCTCAGGTT

chr1(120900969)

0

2

2

NF

1

B90-1

TTAATATCCCACCTTTGCACAGTAGACAAT

chr3(137392502)

2

0

2

NF

1

B92-2

TTAAACACACACTTAGAGGGAAATAATTCAT

chr18(11877795)

0

2

2

NF

1

B82-3

TAAAGAATATAAGGCCAAGCACAGTGGCT

chr11(27402368)

1

1

2

NF

1

B89-3

TTAAATAAAGATAATAATACTAACCATGGC

chr3(57972969)

1

1

2

NF

1

B92-1

TTAAAGAAACAAGTTAACACCGAAGCCAGA

chr17(60391785)

2

2

4

NF

1

B77-4

TTAAAGACCCTGTCTCTTAAAAAAAAAAAA

chr16(29401156)

0

4

4

NF

1

B79-2

TTAAGGGGGGAAAACAGTTCAGGGCCAACA

chr14(55711916)

1

1

2

NF

1

B84-1

TTAATGTTAAATTACAAACACTGTTTTATC

chr18(29434150)

0

2

2

NF

1

B85-1

TTAAGCACAGTATCAGTGATAAAAATAGCT

chr1(201276407)

1

1

2

NF

1

B82-1

TTAAGCTGAATCTGTTTTTCCCAGTGCCCC

chr2(231461932)

0

2

2

NF

1

Tol2

T111-3

TTTAAGAATGTTGAGTATTGGCCCCCACTC

chr8(9712455)

1

8

9

LINE

1

T147-1

ATCCTGAGCAGCCGAATCTGCAATCATCTT

chr7(154665283)

1

1

2

LTR

1

T3-2

TCCACCACAGCATGAGTTAAACCAAAGTCT

chr7(76097237)

2

0

2

LINE

1

T88-3

GTCTGTACTGCTGCAAAGCTTCACAGACAG

chr10(98485313)

1

2

3

NF

1

T115-4

AATTTATCCATTTCTTCTAGATTTTCTAGT

chr20(1472025)

0

3

3

LINE

4

T103-2

GGCGCCCGCCACTACGCCTGGCTAATTTTT

chr21(13847935)

1

3

4

SINE

1

T162-3

CCAGAGACCTTTGTTCACTTGTTTATCTGC

chr20(33206406)

202

ND

> 202

Low_complexity

1

T157-1

CTCGTACGTAAGTTTTAGTGTGAACATATA

chr4(48956277)

4

3

7

LINE

1

T157-2

GTTAACAGTGACCTATTTGGGAGAAGGGGA

chr7(66290199)

1

1

2

LINE

1

T107-2

AATATATGAGTAGCTAAACAACTCTATAAG

chr2(97613844)

1

1

2

LINE

1

T104-1

GAACACATGGACACAGGAAGGGGAACATCA

chr3(134171282)

1

52

53

LINE

1

T25-3

ACCCCATCTCTACTAAAAATACAAAAAATT

chr6(166733349)

1

1

2

SINE

1