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Table 1 DNA measurements and GMO values (% RRS) for all DNA extraction method/matrix combinations.

From: Testing the interaction between analytical modules: an example with Roundup Ready®soybean line GTS 40-3-2

Extraction method

Matrix

260:280 nm ratio

260:230 nm ratio

Spectrophotometric DNA yield

(μg g-1)

Inhibition run

% RRS

Fluorescence DNA yield

(μg g-1)

CTAB

Feed

1.89

2.42

114.0

Ok

0.90

84.5

 

Feed

1.87

2.39

133.5

Ok

0.88

101.0

 

Feed

1.88

2.34

127.0

Ok

0.78

99.0

 

Feed

1.86

2.42

121.0

Ok

0.63

94.0

 

Feed

1.87

2.35

144.0

Out of AC*

0.82

114.0

 

Feed

1.89

2.42

103.5

Ok

1.11

80.0

 

Biscuit

1.6

1.64

28.5

Ok

1.74

7.5

 

Biscuit

1.38

1.32

12.5

Ok

1.55

3.0

 

Biscuit

1.41

1.17

10.0

Out of AC

2.04

3.0

 

Biscuit

1.63

1.63

25.5

Ok

1.19

6.5

 

Biscuit

1.58

1.71

24.5

Ok

1.40

7.5

 

Biscuit

1.3

1.10

10.0

Ok

1.32

2.5

 

CRM 1%

1.67

1.87

69.5

Ok

1.31

56.0

 

CRM 1%

1.70

1.90

45.5

Ok

1.34

38.5

 

CRM 1%

1.73

2.15

65.0

Ok

1.01

59.0

 

CRM 1%

1.69

1.92

43.0

Ok

1.14

36.0

 

CRM 1%

1.69

1.95

41.0

Ok

1.45

47.5

 

CRM 1%

1.73

2.05

67.0

Ok

1.09

81.0

Wizard

Feed

1.70

0.87

83.0

Out of AC

1.31

32.5

 

Feed

1.77

0.67

105.5

Out of AC

0.96

38.0

 

Feed

1.66

0.92

118.0

Out of AC

1.50

33.5

 

Feed

1.86

0.27

70.0

Ok

1.07

37.5

 

Feed

1.79

1.05

49.0

Out of AC

1.35

24.8

 

Feed

1.72

1.10

68.0

Out of AC

1.35

28.3

 

Biscuit

1.77

0.39

92.0

Ok

3.29

4.1

 

Biscuit

1.84

0.13

11.5

Ok

3.06

1.7

 

Biscuit

1.86

0.18

30.5

Ok

4.90

2.8

 

Biscuit

1.83

0.34

64.0

Out of AC

3.15

2.6

 

Biscuit

1.8

0.31

84.0

Ok

2.03

3.2

 

Biscuit

1.86

0.17

62.5

Ok

2.11

3.4

 

CRM 1%

1.59

0.23

62.0

Out of AC

1.04

3.7

 

CRM 1%

2.02

0.21

46.5

Ok

1.45

10.9

 

CRM 1%

1.98

0.17

56.5

Ok

0.58

4.1

 

CRM 1%

2.09

0.04

14.5

Ok

1.08

5.4

 

CRM 1%

1.87

0.27

86.5

Out of AC

1.34

9.6

 

CRM 1%

1.91

0.08

29.0

Ok

1.31

12.2

Dellaporta

Feed

2.19

0.18

72.0

Out of AC

0.99

10.3

 

Feed

2.05

0.27

111.0

Ok

0.90

24.8

 

Feed

2.07

0.27

107.5

Ok

0.94

22.8

 

Feed

1.94

0.61

294.0

Out of AC

0.80

61.0

 

Feed

2.17

0.2

78.5

Ok

0.86

14.8

 

Feed

2.75

0.09

34.5

Ok

0.71

7.8

 

Biscuit

2.27

0.11

62.5

Ok

1.15

4.5

 

Biscuit

2.87

0.05

29.0

Ok

1.13

4.2

 

Biscuit

2.39

0.08

43.5

Ok

1.26

3.0

 

Biscuit

2.83

0.05

29.5

Ok

1.40

4.0

 

Biscuit

2.58

0.06

32.0

Ok

0.96

3.0

 

Biscuit

2.58

0.06

34.5

Ok

1.01

4.0

 

CRM 1%

1.90

2.11

74.0

Ok

1.03

42.5

 

CRM 1%

1.91

2.25

78.5

Ok

1.14

33.0

 

CRM 1%

1.71

1.89

21.5

Out of AC

0.93

15.0

 

CRM 1%

1.58

0.73

40.5

Out of AC

1.06

17.7

 

CRM 1%

1.78

4.25

45.0

Ok

1.25

22.2

 

CRM 1%

1.84

1.94

20.0

Out of AC

1.25

2.8

  1. * 'Out of AC' stands for data outside the acceptance criteria for DNA quality from inhibition runs